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Are they from the same litter? It sounds as much. The difficult problem with having puppies from the same litter is that they tend to bond to each other rather than to their master. So I definetly would suggest training them seperately. For things such as potty training, this would be difficult since puppies usually need to go outside at the same time (after eating, sleeping, etc). But for the basic obedience, i'd crate one dog and train the other, and then switch it around. That way, not only do both dogs get the training and attention they need, they also learn to be independent and alone. Hope this helps!